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GSEAlens: An Interactive Exploration Platform for Gene Set Enrichment Analysis2 months ago
Package Introduction | Integration with Bioconductor Workflows | Installation | Quick Start | GSEAlens Processing | Creating GSEA Pathway Object | Assembling Computation Object | Running Processing | Interactive Analysis and Viewing | Interactive Exploration with the Shiny Application | Launching the App | Application Layout | Sidebar -- Data Preprocessing | Tab 1 -- Main Workspace | Tab 2 -- Holographic Quadruple Linkage | Tab 3 -- Pathway Relationship Exploration | Tab 4 -- HubGene Network | Tab 5 -- AI Interpretation | Tab 6 -- Joint GSEA Canvas | Interpreting Outputs | Reproducible Code Export | Package Intermediate Object Descriptions | GseaEnv Object | GseaRes Object | GseaTask Object | Session Info | References
GSEAlens: Preparing Input Data from limma-voom and DESeq2 Workflows2 months ago
Installation | Introduction | Example Data | limma-voom Workflow | DESeq2 Workflow (SummarizedExperiment Input) | DESeq2 Workflow (Count Matrix Input) | Next Step
GSEAlens:从 limma-voom 和 DESeq2 流程准备输入数据2 months ago
安装 | 简介 | 示例数据 | limma-voom 流程 | DESeq2 流程(SummarizedExperiment 输入) | DESeq2 流程(Count Matrix 输入) | 下一步
GSEAlens:基因集富集分析的交互式探索平台2 months ago
包简介 | 与 Bioconductor 工作流的整合 | 安装 | 快速开始 | GSEAlens处理 | 创建GSEA基因集对象 | 组装运算对象 | 运行处理 | 交互式分析与查看 | 使用 Shiny 应用进行交互式探索 | 启动应用 | 应用布局 | 侧边栏 -- 数据预处理 | Tab 1 -- 主工作区(Main Workspace) | Tab 2 -- 全息四象限联动(Holographic Quadruple Linkage) | Tab 3 -- 通路关系探索(Pathway Relationship Exploration) | Tab 4 -- HubGene 网络(HubGene Network) | Tab 5 -- AI 解读(AI Interpretation) | Tab 6 -- 联合 GSEA 画布(Joint GSEA Canvas) | 输出解读指南 | 可重现代码导出 | R包中间对象说明 | GseaEnv 对象 | GseaRes 对象 | GseaTask 对象 | Session info | References